J4_4WPO_018

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WPO_018 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.066

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4WPO|1|CA|C|297
4WPO|1|CA|G|298
4WPO|1|CA|A|299
4WPO|1|CA|A|300
4WPO|1|CA|G|301
*
4WPO|1|CA|C|316
4WPO|1|CA|G|317
4WPO|1|CA|C|318
4WPO|1|CA|C|319
*
4WPO|1|CA|G|323
4WPO|1|CA|A|324
4WPO|1|CA|G|325
*
4WPO|1|CA|C|337
4WPO|1|CA|G|338
4WPO|1|CA|U|339
4WPO|1|CA|A|340
4WPO|1|CA|G|341

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CF

50S ribosomal protein L4

Chain CY

50S ribosomal protein L24