J4_4WPO_024

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4WPO|1|CA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WPO_024 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0619

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4WPO|1|CA|U|1833
4WPO|1|CA|U|1834
4WPO|1|CA|G|1835
*
4WPO|1|CA|C|1905
4WPO|1|CA|G|1906
*
4WPO|1|CA|C|1924
4WPO|1|CA|C|1925
4WPO|1|CA|U|1926
4WPO|1|CA|A|1927
4WPO|1|CA|A|1928
4WPO|1|CA|G|1929
4WPO|1|CA|G|1930
4WPO|1|CA|U|1931
4WPO|1|CA|A|1932
4WPO|1|CA|G|1933
*
4WPO|1|CA|C|1967
4WPO|1|CA|G|1968
4WPO|1|CA|A|1969
4WPO|1|CA|A|1970
4WPO|1|CA|A|1971
4WPO|1|CA|A|1972

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA

Chain DX

Transfer RNA; tRNA