J4_4WPO_035

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

A(4SU)AG*CAG*CGU(7MG)UCC*GU

Length

16 nucleotides

Bulged bases

4WPO|1|DW|4SU|8, 4WPO|1|DW|U|47, 4WPO|1|DW|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WPO_035 not in the Motif Atlas

Homologous match to J4_6UGG_002

Geometric discrepancy: 0.2693

The information below is about J4_6UGG_002

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_58311.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4WPO|1|DW|A|7
4WPO|1|DW|4SU|8
4WPO|1|DW|A|9
4WPO|1|DW|G|10
*
4WPO|1|DW|C|25
4WPO|1|DW|A|26
4WPO|1|DW|G|27
*
4WPO|1|DW|C|43
4WPO|1|DW|G|44
4WPO|1|DW|U|45
4WPO|1|DW|7MG|46
4WPO|1|DW|U|47
4WPO|1|DW|C|48
4WPO|1|DW|C|49
*
4WPO|1|DW|G|65
4WPO|1|DW|U|66

Current chains

Chain DW

A-site tRNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain DZ

50S ribosomal protein L9,Elongation factor G