J4_4WQR_012

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4WQR|1|14|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQR_012 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0755

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

4WQR|1|14|U|1833
4WQR|1|14|U|1834
4WQR|1|14|G|1835
*
4WQR|1|14|C|1905
4WQR|1|14|G|1906
*
4WQR|1|14|C|1924
4WQR|1|14|C|1925
4WQR|1|14|U|1926
4WQR|1|14|A|1927
4WQR|1|14|A|1928
4WQR|1|14|G|1929
4WQR|1|14|G|1930
4WQR|1|14|U|1931
4WQR|1|14|A|1932
4WQR|1|14|G|1933
*
4WQR|1|14|C|1967
4WQR|1|14|G|1968
4WQR|1|14|A|1969
4WQR|1|14|A|1970
4WQR|1|14|A|1971
4WQR|1|14|A|1972

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 2L

Transfer RNA; tRNA