J4_4WQU_003

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

4WQU|1|AA|G|1317, 4WQU|1|AA|A|1318, 4WQU|1|AA|U|1319, 4WQU|1|AA|G|1694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQU_003 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0567

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4WQU|1|AA|C|1316
4WQU|1|AA|G|1317
4WQU|1|AA|A|1318
4WQU|1|AA|U|1319
4WQU|1|AA|A|1320
4WQU|1|AA|A|1321
4WQU|1|AA|A|1322
*
4WQU|1|AA|U|1340
4WQU|1|AA|C|1341
*
4WQU|1|AA|G|1692
4WQU|1|AA|C|1693
4WQU|1|AA|G|1694
4WQU|1|AA|C|1695
*
4WQU|1|AA|G|2031
4WQU|1|AA|G|2032

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L32

Chain AR

50S ribosomal protein L17

Chain AW

50S ribosomal protein L22