J4_4WQU_004

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4WQU|1|AA|U|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQU_004 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0657

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4WQU|1|AA|G|1356
4WQU|1|AA|G|1357
4WQU|1|AA|U|1358
4WQU|1|AA|U|1359
4WQU|1|AA|C|1360
*
4WQU|1|AA|G|1384
4WQU|1|AA|G|1385
4WQU|1|AA|U|1386
4WQU|1|AA|U|1387
4WQU|1|AA|A|1388
4WQU|1|AA|G|1389
*
4WQU|1|AA|C|1450
4WQU|1|AA|U|1451
*
4WQU|1|AA|A|1643
4WQU|1|AA|C|1644
4WQU|1|AA|C|1645
4WQU|1|AA|C|1646
4WQU|1|AA|G|1647
4WQU|1|AA|U|1648
4WQU|1|AA|A|1649
4WQU|1|AA|C|1650

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L34

Chain AX

50S ribosomal protein L23