J4_4WQU_017

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQU_017 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0812

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4WQU|1|CA|C|297
4WQU|1|CA|G|298
4WQU|1|CA|A|299
4WQU|1|CA|A|300
4WQU|1|CA|G|301
*
4WQU|1|CA|C|316
4WQU|1|CA|G|317
4WQU|1|CA|C|318
4WQU|1|CA|C|319
*
4WQU|1|CA|G|323
4WQU|1|CA|A|324
4WQU|1|CA|G|325
*
4WQU|1|CA|C|337
4WQU|1|CA|G|338
4WQU|1|CA|U|339
4WQU|1|CA|A|340
4WQU|1|CA|G|341

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CF

50S ribosomal protein L4

Chain CY

50S ribosomal protein L24