J4_4WQU_018

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

4WQU|1|CA|G|1271, 4WQU|1|CA|A|1272, 4WQU|1|CA|U|1273, 4WQU|1|CA|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQU_018 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0592

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4WQU|1|CA|C|1270
4WQU|1|CA|G|1271
4WQU|1|CA|A|1272
4WQU|1|CA|U|1273
4WQU|1|CA|A|1274
4WQU|1|CA|A|1275
4WQU|1|CA|A|1276
*
4WQU|1|CA|U|1294
4WQU|1|CA|C|1295
*
4WQU|1|CA|G|1645
4WQU|1|CA|C|1646
4WQU|1|CA|G|1647
4WQU|1|CA|C|1648
*
4WQU|1|CA|G|2009
4WQU|1|CA|G|2010

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L32

Chain CR

50S ribosomal protein L17

Chain CW

50S ribosomal protein L22