J4_4WQU_029
3D structure
- PDB id
- 4WQU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 4WQU|1|DW|4SU|8, 4WQU|1|DW|U|47, 4WQU|1|DW|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4WQU_029 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.2508
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.27
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 53
Unit IDs
4WQU|1|DW|A|7
4WQU|1|DW|4SU|8
4WQU|1|DW|A|9
4WQU|1|DW|G|10
*
4WQU|1|DW|C|25
4WQU|1|DW|A|26
4WQU|1|DW|G|27
*
4WQU|1|DW|C|43
4WQU|1|DW|G|44
4WQU|1|DW|U|45
4WQU|1|DW|7MG|46
4WQU|1|DW|U|47
4WQU|1|DW|C|48
4WQU|1|DW|C|49
*
4WQU|1|DW|G|65
4WQU|1|DW|U|66
Current chains
- Chain DW
- P-site tRNA
Nearby chains
- Chain C0
- 50S ribosomal protein L27
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain CQ
- 50S ribosomal protein L16
- Chain DA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DM
- 30S ribosomal protein S13
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