Loop J4_4WRA

3D structure

PDB id: 4WRA (explore in PDB, NAKB, or RNA 3D Hub)
Description: Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å

Loop

Sequence: CGAG*CGUAG*CGAG*CGCAAACGGCCCGCACGCGGGCCGAAAAG
Length: 42 nucleotides
Bulged bases: 4WRA|1|14|C|654|||K
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4WRA|1|14|C|601
4WRA|1|14|G|602
4WRA|1|14|A|603
4WRA|1|14|G|604
*
4WRA|1|14|C|624
4WRA|1|14|G|625
4WRA|1|14|U|626
4WRA|1|14|A|627
4WRA|1|14|G|628
*
4WRA|1|14|C|635
4WRA|1|14|G|636
4WRA|1|14|A|637
4WRA|1|14|G|638
*
4WRA|1|14|C|650
4WRA|1|14|G|651
4WRA|1|14|C|652
4WRA|1|14|A|653
4WRA|1|14|A|654
4WRA|1|14|A|654|||A
4WRA|1|14|C|654|||B
4WRA|1|14|G|654|||C
4WRA|1|14|G|654|||D
4WRA|1|14|C|654|||E
4WRA|1|14|C|654|||F
4WRA|1|14|C|654|||G
4WRA|1|14|G|654|||H
4WRA|1|14|C|654|||I
4WRA|1|14|A|654|||J
4WRA|1|14|C|654|||K
4WRA|1|14|G|654|||L
4WRA|1|14|C|654|||M
4WRA|1|14|G|654|||N
4WRA|1|14|G|654|||O
4WRA|1|14|G|654|||P
4WRA|1|14|C|654|||Q
4WRA|1|14|C|654|||R
4WRA|1|14|G|654|||S
4WRA|1|14|A|654|||T
4WRA|1|14|A|654|||U
4WRA|1|14|A|654|||V
4WRA|1|14|A|655
4WRA|1|14|G|656

Current chains

Chain 14: 23S ribosomal RNA

Nearby chains

Chain 35: 50S ribosomal protein L15
Chain 39: 50S ribosomal protein L4
Chain M5: 50S ribosomal protein L35

J4_4WRA_006