J4_4WRA_028

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GU*GCGGCCAAAGGGAGC*GCCGUCAUCGACUUCGAAG*CUUCC

Length

41 nucleotides

Bulged bases

4WRA|1|1L|C|16, 4WRA|1|1L|G|17, 4WRA|1|1L|G|18, 4WRA|1|1L|C|19, 4WRA|1|1L|C|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WRA|1|1L|G|7
4WRA|1|1L|U|8
*
4WRA|1|1L|G|15
4WRA|1|1L|C|16
4WRA|1|1L|G|17
4WRA|1|1L|G|18
4WRA|1|1L|C|19
4WRA|1|1L|C|20
4WRA|1|1L|A|21
4WRA|1|1L|A|22
4WRA|1|1L|A|23
4WRA|1|1L|G|24
4WRA|1|1L|G|25
4WRA|1|1L|G|26
4WRA|1|1L|A|27
4WRA|1|1L|G|28
4WRA|1|1L|C|29
*
4WRA|1|1L|G|43
4WRA|1|1L|C|44
4WRA|1|1L|C|45
4WRA|1|1L|G|46
4WRA|1|1L|U|47
4WRA|1|1L|C|48
4WRA|1|1L|A|49
4WRA|1|1L|U|50
4WRA|1|1L|C|51
4WRA|1|1L|G|52
4WRA|1|1L|A|53
4WRA|1|1L|C|54
4WRA|1|1L|U|55
4WRA|1|1L|U|56
4WRA|1|1L|C|57
4WRA|1|1L|G|58
4WRA|1|1L|A|59
4WRA|1|1L|A|60
4WRA|1|1L|G|61
*
4WRA|1|1L|C|71
4WRA|1|1L|U|72
4WRA|1|1L|U|73
4WRA|1|1L|C|74
4WRA|1|1L|C|75

Current chains

Chain 1L

tRNA-Tyr

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 45

50S ribosomal protein L16