J4_4WRA_030
3D structure
- PDB id
- 4WRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4WRA|1|2L|4SU|8, 4WRA|1|2L|U|48, 4WRA|1|2L|C|49
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4WRA_030 not in the Motif Atlas
- Homologous match to J4_5E81_027
- Geometric discrepancy: 0.0849
- The information below is about J4_5E81_027
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
4WRA|1|2L|G|7
4WRA|1|2L|4SU|8
4WRA|1|2L|G|9
4WRA|1|2L|G|10
*
4WRA|1|2L|C|26
4WRA|1|2L|G|27
4WRA|1|2L|U|28
*
4WRA|1|2L|A|44
4WRA|1|2L|A|45
4WRA|1|2L|G|46
4WRA|1|2L|G|47
4WRA|1|2L|U|48
4WRA|1|2L|C|49
4WRA|1|2L|G|50
*
4WRA|1|2L|C|66
4WRA|1|2L|C|67
Current chains
- Chain 2L
- tRNA-fMet
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1L
- Transfer RNA; tRNA
- Chain 45
- 50S ribosomal protein L16
- Chain 4A
- 30S ribosomal protein S13
- Chain E5
- 50S ribosomal protein L27
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