J4_4WSD_002

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

AAGAG*CAUGUG*CAAAGGG*CCCGCUU

Length

25 nucleotides

Bulged bases

4WSD|1|13|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|13|A|140
4WSD|1|13|A|141
4WSD|1|13|G|142
4WSD|1|13|A|143
4WSD|1|13|G|144
*
4WSD|1|13|C|178
4WSD|1|13|A|179
4WSD|1|13|U|180
4WSD|1|13|G|181
4WSD|1|13|U|182
4WSD|1|13|G|183
*
4WSD|1|13|C|194
4WSD|1|13|A|195
4WSD|1|13|A|196
4WSD|1|13|A|197
4WSD|1|13|G|198
4WSD|1|13|G|199
4WSD|1|13|G|200
*
4WSD|1|13|C|217
4WSD|1|13|C|218
4WSD|1|13|C|219
4WSD|1|13|G|220
4WSD|1|13|C|221
4WSD|1|13|U|222
4WSD|1|13|U|223

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain BI

30S ribosomal protein S20