J4_4WSD_019

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WSD_019 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0854

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

4WSD|1|1H|C|297
4WSD|1|1H|G|298
4WSD|1|1H|A|299
4WSD|1|1H|A|300
4WSD|1|1H|G|301
*
4WSD|1|1H|C|316
4WSD|1|1H|G|317
4WSD|1|1H|C|318
4WSD|1|1H|C|319
*
4WSD|1|1H|G|323
4WSD|1|1H|A|324
4WSD|1|1H|G|325
*
4WSD|1|1H|C|337
4WSD|1|1H|G|338
4WSD|1|1H|U|339
4WSD|1|1H|A|340
4WSD|1|1H|G|341

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain G8

50S ribosomal protein L24