J4_4WSD_020

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

4WSD|1|1H|G|1271, 4WSD|1|1H|A|1272, 4WSD|1|1H|U|1273, 4WSD|1|1H|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WSD_020 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0639

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4WSD|1|1H|C|1270
4WSD|1|1H|G|1271
4WSD|1|1H|A|1272
4WSD|1|1H|U|1273
4WSD|1|1H|A|1274
4WSD|1|1H|A|1275
4WSD|1|1H|A|1276
*
4WSD|1|1H|U|1294
4WSD|1|1H|C|1295
*
4WSD|1|1H|G|1645
4WSD|1|1H|C|1646
4WSD|1|1H|G|1647
4WSD|1|1H|C|1648
*
4WSD|1|1H|G|2009
4WSD|1|1H|G|2010

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 98

50S ribosomal protein L17

Chain E8

50S ribosomal protein L22

Chain N8

50S ribosomal protein L32