3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
4WSD|1|1H|A|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4WSD_025 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0694
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4WSD|1|1H|U|1833
4WSD|1|1H|U|1834
4WSD|1|1H|G|1835
*
4WSD|1|1H|C|1905
4WSD|1|1H|G|1906
*
4WSD|1|1H|C|1924
4WSD|1|1H|C|1925
4WSD|1|1H|U|1926
4WSD|1|1H|A|1927
4WSD|1|1H|A|1928
4WSD|1|1H|G|1929
4WSD|1|1H|G|1930
4WSD|1|1H|U|1931
4WSD|1|1H|A|1932
4WSD|1|1H|G|1933
*
4WSD|1|1H|C|1967
4WSD|1|1H|G|1968
4WSD|1|1H|A|1969
4WSD|1|1H|A|1970
4WSD|1|1H|A|1971
4WSD|1|1H|A|1972

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 11
50S ribosomal protein L2
Chain 13
Small subunit ribosomal RNA; SSU rRNA
Chain 2K
Transfer RNA; tRNA

Coloring options:


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