J4_4WSD_037

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

A(4SU)AG*CAG*CGU(7MG)UCC*GU

Length

16 nucleotides

Bulged bases

4WSD|1|3L|4SU|8, 4WSD|1|3L|U|47

QA status

Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WSD_037 not in the Motif Atlas

Homologous match to J4_5E81_030

Geometric discrepancy: 0.3406

The information below is about J4_5E81_030

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

4WSD|1|3L|A|7
4WSD|1|3L|4SU|8
4WSD|1|3L|A|9
4WSD|1|3L|G|10
*
4WSD|1|3L|C|25
4WSD|1|3L|A|26
4WSD|1|3L|G|27
*
4WSD|1|3L|C|43
4WSD|1|3L|G|44
4WSD|1|3L|U|45
4WSD|1|3L|7MG|46
4WSD|1|3L|U|47
4WSD|1|3L|C|48
4WSD|1|3L|C|49
*
4WSD|1|3L|G|65
4WSD|1|3L|U|66

Current chains

Chain 3L

tRNA-Phe

Nearby chains

Chain 2A

30S ribosomal protein S11

Chain 62

30S ribosomal protein S7