J4_4WSM_012

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4WSM|1|14|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WSM_012 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0795

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4WSM|1|14|U|1833
4WSM|1|14|U|1834
4WSM|1|14|G|1835
*
4WSM|1|14|C|1905
4WSM|1|14|G|1906
*
4WSM|1|14|C|1924
4WSM|1|14|C|1925
4WSM|1|14|U|1926
4WSM|1|14|A|1927
4WSM|1|14|A|1928
4WSM|1|14|G|1929
4WSM|1|14|G|1930
4WSM|1|14|U|1931
4WSM|1|14|A|1932
4WSM|1|14|G|1933
*
4WSM|1|14|C|1967
4WSM|1|14|G|1968
4WSM|1|14|A|1969
4WSM|1|14|A|1970
4WSM|1|14|A|1971
4WSM|1|14|A|1972

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 2L

Transfer RNA; tRNA