J4_4WT1_025

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4WT1|1|1H|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WT1_025 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0641

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4WT1|1|1H|U|1833
4WT1|1|1H|U|1834
4WT1|1|1H|G|1835
*
4WT1|1|1H|C|1905
4WT1|1|1H|G|1906
*
4WT1|1|1H|C|1924
4WT1|1|1H|C|1925
4WT1|1|1H|U|1926
4WT1|1|1H|A|1927
4WT1|1|1H|A|1928
4WT1|1|1H|G|1929
4WT1|1|1H|G|1930
4WT1|1|1H|U|1931
4WT1|1|1H|A|1932
4WT1|1|1H|G|1933
*
4WT1|1|1H|C|1967
4WT1|1|1H|G|1968
4WT1|1|1H|A|1969
4WT1|1|1H|A|1970
4WT1|1|1H|A|1971
4WT1|1|1H|A|1972

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 2K

Transfer RNA; tRNA