J4_4WT1_037
3D structure
- PDB id
- 4WT1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 4WT1|1|3L|U|8, 4WT1|1|3L|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4WT1_037 not in the Motif Atlas
- Homologous match to J4_5E81_030
- Geometric discrepancy: 0.2742
- The information below is about J4_5E81_030
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
4WT1|1|3L|A|7
4WT1|1|3L|U|8
4WT1|1|3L|A|9
4WT1|1|3L|G|10
*
4WT1|1|3L|C|25
4WT1|1|3L|A|26
4WT1|1|3L|G|27
*
4WT1|1|3L|C|43
4WT1|1|3L|G|44
4WT1|1|3L|U|45
4WT1|1|3L|G|46
4WT1|1|3L|U|47
4WT1|1|3L|C|48
4WT1|1|3L|C|49
*
4WT1|1|3L|G|65
4WT1|1|3L|U|66
Current chains
- Chain 3L
- tRNA-Phe
Nearby chains
- Chain 2A
- 30S ribosomal protein S11
- Chain 62
- 30S ribosomal protein S7
- Chain K5
- 50S ribosomal protein L33
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