J4_4WU1_018

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WU1_018 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0729

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4WU1|1|1H|C|297
4WU1|1|1H|G|298
4WU1|1|1H|A|299
4WU1|1|1H|A|300
4WU1|1|1H|G|301
*
4WU1|1|1H|C|316
4WU1|1|1H|G|317
4WU1|1|1H|C|318
4WU1|1|1H|C|319
*
4WU1|1|1H|G|323
4WU1|1|1H|A|324
4WU1|1|1H|G|325
*
4WU1|1|1H|C|337
4WU1|1|1H|G|338
4WU1|1|1H|U|339
4WU1|1|1H|A|340
4WU1|1|1H|G|341

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain G8

50S ribosomal protein L24