J4_4WZO_005

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WZO_005 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0967

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4WZO|1|14|C|297
4WZO|1|14|G|298
4WZO|1|14|A|299
4WZO|1|14|A|300
4WZO|1|14|G|301
*
4WZO|1|14|C|316
4WZO|1|14|G|317
4WZO|1|14|C|318
4WZO|1|14|C|319
*
4WZO|1|14|G|323
4WZO|1|14|A|324
4WZO|1|14|G|325
*
4WZO|1|14|C|337
4WZO|1|14|G|338
4WZO|1|14|U|339
4WZO|1|14|A|340
4WZO|1|14|G|341

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain C5

50S ribosomal protein L24