J4_4WZO_012

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4WZO|1|14|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WZO_012 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0959

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

4WZO|1|14|U|1833
4WZO|1|14|U|1834
4WZO|1|14|G|1835
*
4WZO|1|14|C|1905
4WZO|1|14|G|1906
*
4WZO|1|14|C|1924
4WZO|1|14|C|1925
4WZO|1|14|U|1926
4WZO|1|14|A|1927
4WZO|1|14|A|1928
4WZO|1|14|G|1929
4WZO|1|14|G|1930
4WZO|1|14|U|1931
4WZO|1|14|A|1932
4WZO|1|14|G|1933
*
4WZO|1|14|C|1967
4WZO|1|14|G|1968
4WZO|1|14|A|1969
4WZO|1|14|A|1970
4WZO|1|14|A|1971
4WZO|1|14|A|1972

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 2L

Transfer RNA; tRNA