J4_4WZO_035

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

4WZO|1|1K|U|8, 4WZO|1|1K|U|48, 4WZO|1|1K|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WZO_035 not in the Motif Atlas

Homologous match to J4_9DFC_015

Geometric discrepancy: 0.2728

The information below is about J4_9DFC_015

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

4WZO|1|1K|G|7
4WZO|1|1K|U|8
4WZO|1|1K|G|9
4WZO|1|1K|G|10
*
4WZO|1|1K|C|26
4WZO|1|1K|G|27
4WZO|1|1K|U|28
*
4WZO|1|1K|A|44
4WZO|1|1K|A|45
4WZO|1|1K|G|46
4WZO|1|1K|G|47
4WZO|1|1K|U|48
4WZO|1|1K|C|49
4WZO|1|1K|G|50
*
4WZO|1|1K|C|66
4WZO|1|1K|C|67

Current chains

Chain 1K

tRNA-fMet

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA