J4_4Y4P_008
3D structure
- PDB id
- 4Y4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- UUG*CG*CCUAAGGUAG*CGAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4Y4P|1|1A|A|1993
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4Y4P_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0578
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
4Y4P|1|1A|U|1864
4Y4P|1|1A|U|1865
4Y4P|1|1A|G|1866
*
4Y4P|1|1A|C|1927
4Y4P|1|1A|G|1928
*
4Y4P|1|1A|C|1946
4Y4P|1|1A|C|1947
4Y4P|1|1A|U|1948
4Y4P|1|1A|A|1949
4Y4P|1|1A|A|1950
4Y4P|1|1A|G|1951
4Y4P|1|1A|G|1952
4Y4P|1|1A|U|1953
4Y4P|1|1A|A|1954
4Y4P|1|1A|G|1955
*
4Y4P|1|1A|C|1989
4Y4P|1|1A|G|1990
4Y4P|1|1A|A|1991
4Y4P|1|1A|A|1992
4Y4P|1|1A|A|1993
4Y4P|1|1A|A|1994
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1x
- Transfer RNA; tRNA
Coloring options: