J4_4Y4P_026

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4P|1|2A|G|2643
4Y4P|1|2A|G|2644
4Y4P|1|2A|G|2645
4Y4P|1|2A|C|2646
*
4Y4P|1|2A|G|2674
4Y4P|1|2A|A|2675
4Y4P|1|2A|C|2676
*
4Y4P|1|2A|G|2731
4Y4P|1|2A|G|2732
4Y4P|1|2A|A|2733
4Y4P|1|2A|A|2734
4Y4P|1|2A|G|2735
*
4Y4P|1|2A|C|2769
4Y4P|1|2A|G|2770
4Y4P|1|2A|C|2771

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2O

50S ribosomal protein L14