J4_4YBB_009

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4YBB|1|CA|U|653, 4YBB|1|CA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4YBB_009 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.0672

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4YBB|1|CA|C|601
4YBB|1|CA|A|602
4YBB|1|CA|A|603
4YBB|1|CA|G|604
*
4YBB|1|CA|C|624
4YBB|1|CA|G|625
4YBB|1|CA|A|626
4YBB|1|CA|A|627
4YBB|1|CA|G|628
*
4YBB|1|CA|C|635
4YBB|1|CA|G|636
4YBB|1|CA|A|637
4YBB|1|CA|G|638
*
4YBB|1|CA|C|650
4YBB|1|CA|G|651
4YBB|1|CA|U|652
4YBB|1|CA|U|653
4YBB|1|CA|A|654
4YBB|1|CA|A|655
4YBB|1|CA|G|656

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein L35

Chain CE

50S ribosomal protein L4

Chain CM

50S ribosomal protein L15