J4_4YHH_004
3D structure
- PDB id
- 4YHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- UGGA*UACAAUG*CCCAGUUCGGAUU*AUGAAGCCGGAA
- Length
- 36 nucleotides
- Bulged bases
- 4YHH|1|A|U|1240, 4YHH|1|A|U|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4YHH|1|A|U|943
4YHH|1|A|G|944
4YHH|1|A|G|945
4YHH|1|A|A|946
*
4YHH|1|A|U|1235
4YHH|1|A|A|1236
4YHH|1|A|C|1237
4YHH|1|A|A|1238
4YHH|1|A|A|1239
4YHH|1|A|U|1240
4YHH|1|A|G|1241
*
4YHH|1|A|C|1296
4YHH|1|A|C|1297
4YHH|1|A|C|1298
4YHH|1|A|A|1299
4YHH|1|A|G|1300
4YHH|1|A|U|1301
4YHH|1|A|U|1302
4YHH|1|A|C|1303
4YHH|1|A|G|1304
4YHH|1|A|G|1305
4YHH|1|A|A|1306
4YHH|1|A|U|1307
4YHH|1|A|U|1308
*
4YHH|1|A|A|1329
4YHH|1|A|U|1330
4YHH|1|A|G|1331
4YHH|1|A|A|1332
4YHH|1|A|A|1333
4YHH|1|A|G|1334
4YHH|1|A|C|1335
4YHH|1|A|C|1336
4YHH|1|A|G|1337
4YHH|1|A|G|1338
4YHH|1|A|A|1339
4YHH|1|A|A|1340
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain M
- 30S ribosomal protein S13
- Chain V
- 30S ribosomal protein Thx
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