3D structure

PDB id
4YPB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GUGG*CGU*AAGGUCG*CC
Length
16 nucleotides
Bulged bases
4YPB|1|QW|U|47, 4YPB|1|QW|C|48
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4YPB_005 not in the Motif Atlas
Homologous match to J4_8VU0_001
Geometric discrepancy: 0.2286
The information below is about J4_8VU0_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_70449.29
Basepair signature
cWW-F-cWW-cWW-cHS-F-cWW-cWW
Number of instances in this motif group
54

Unit IDs

4YPB|1|QW|G|7
4YPB|1|QW|U|8
4YPB|1|QW|G|9
4YPB|1|QW|G|10
*
4YPB|1|QW|C|25
4YPB|1|QW|G|26
4YPB|1|QW|U|27
*
4YPB|1|QW|A|43
4YPB|1|QW|A|44
4YPB|1|QW|G|45
4YPB|1|QW|G|46
4YPB|1|QW|U|47
4YPB|1|QW|C|48
4YPB|1|QW|G|49
*
4YPB|1|QW|C|65
4YPB|1|QW|C|66

Current chains

Chain QW
tRNA fMet

Nearby chains

Chain QG
30S ribosomal protein S7
Chain QK
30S ribosomal protein S11
Chain QV
Transfer RNA; tRNA
Chain R6
50S ribosomal protein L33

Coloring options:


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