J4_4YPB_023
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 4YPB|1|YA|G|1271, 4YPB|1|YA|A|1272, 4YPB|1|YA|U|1273, 4YPB|1|YA|G|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4YPB_023 not in the Motif Atlas
- Homologous match to J4_9DFE_003
- Geometric discrepancy: 0.0773
- The information below is about J4_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4YPB|1|YA|C|1270
4YPB|1|YA|G|1271
4YPB|1|YA|A|1272
4YPB|1|YA|U|1273
4YPB|1|YA|A|1274
4YPB|1|YA|A|1275
4YPB|1|YA|A|1276
*
4YPB|1|YA|U|1294
4YPB|1|YA|C|1295
*
4YPB|1|YA|G|1645
4YPB|1|YA|C|1646
4YPB|1|YA|G|1647
4YPB|1|YA|C|1648
*
4YPB|1|YA|G|2009
4YPB|1|YA|G|2010
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y5
- 50S ribosomal protein L32
- Chain YR
- 50S ribosomal protein L17
- Chain YW
- 50S ribosomal protein L22
Coloring options: