3D structure

PDB id
4Z3S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.65 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
4Z3S|1|1A|A|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4Z3S_008 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0552
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4Z3S|1|1A|U|1833
4Z3S|1|1A|U|1834
4Z3S|1|1A|G|1835
*
4Z3S|1|1A|C|1905
4Z3S|1|1A|G|1906
*
4Z3S|1|1A|C|1924
4Z3S|1|1A|C|1925
4Z3S|1|1A|U|1926
4Z3S|1|1A|A|1927
4Z3S|1|1A|A|1928
4Z3S|1|1A|G|1929
4Z3S|1|1A|G|1930
4Z3S|1|1A|U|1931
4Z3S|1|1A|A|1932
4Z3S|1|1A|G|1933
*
4Z3S|1|1A|C|1967
4Z3S|1|1A|G|1968
4Z3S|1|1A|A|1969
4Z3S|1|1A|A|1970
4Z3S|1|1A|A|1971
4Z3S|1|1A|A|1972

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1D
50S ribosomal protein L2
Chain 1a
Small subunit ribosomal RNA; SSU rRNA
Chain 1x
Transfer RNA; tRNA

Coloring options:


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