J4_4Z3S_018

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4Z3S_018 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0731

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4Z3S|1|2A|C|297
4Z3S|1|2A|G|298
4Z3S|1|2A|A|299
4Z3S|1|2A|A|300
4Z3S|1|2A|G|301
*
4Z3S|1|2A|C|316
4Z3S|1|2A|G|317
4Z3S|1|2A|C|318
4Z3S|1|2A|C|319
*
4Z3S|1|2A|G|323
4Z3S|1|2A|A|324
4Z3S|1|2A|G|325
*
4Z3S|1|2A|C|337
4Z3S|1|2A|G|338
4Z3S|1|2A|U|339
4Z3S|1|2A|A|340
4Z3S|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24