J4_4Z3S_023

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4Z3S_023 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0461

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4Z3S|1|2A|G|1772
4Z3S|1|2A|A|1773
4Z3S|1|2A|C|1774
4Z3S|1|2A|U|1775
4Z3S|1|2A|G|1776
*
4Z3S|1|2A|C|1788
4Z3S|1|2A|A|1789
4Z3S|1|2A|C|1790
4Z3S|1|2A|A|1791
4Z3S|1|2A|G|1792
*
4Z3S|1|2A|C|1827
4Z3S|1|2A|G|1828
4Z3S|1|2A|A|1829
4Z3S|1|2A|C|1830
*
4Z3S|1|2A|G|1975
4Z3S|1|2A|U|1976
4Z3S|1|2A|A|1977
4Z3S|1|2A|A|1978
4Z3S|1|2A|C|1979

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA