J4_4Z8C_016

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4Z8C_016 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0608

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4Z8C|1|2A|C|320
4Z8C|1|2A|G|321
4Z8C|1|2A|A|322
4Z8C|1|2A|A|323
4Z8C|1|2A|G|324
*
4Z8C|1|2A|C|339
4Z8C|1|2A|G|340
4Z8C|1|2A|C|341
4Z8C|1|2A|C|342
*
4Z8C|1|2A|G|346
4Z8C|1|2A|A|347
4Z8C|1|2A|G|348
*
4Z8C|1|2A|C|360
4Z8C|1|2A|G|361
4Z8C|1|2A|U|362
4Z8C|1|2A|A|363
4Z8C|1|2A|G|364

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24