J4_4Z8C_022

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4Z8C|1|2A|A|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4Z8C_022 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0612

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4Z8C|1|2A|U|1863
4Z8C|1|2A|U|1864
4Z8C|1|2A|G|1865
*
4Z8C|1|2A|C|1926
4Z8C|1|2A|G|1927
*
4Z8C|1|2A|C|1945
4Z8C|1|2A|C|1946
4Z8C|1|2A|U|1947
4Z8C|1|2A|A|1948
4Z8C|1|2A|A|1949
4Z8C|1|2A|G|1950
4Z8C|1|2A|G|1951
4Z8C|1|2A|U|1952
4Z8C|1|2A|A|1953
4Z8C|1|2A|G|1954
*
4Z8C|1|2A|C|1988
4Z8C|1|2A|G|1989
4Z8C|1|2A|A|1990
4Z8C|1|2A|A|1991
4Z8C|1|2A|A|1992
4Z8C|1|2A|A|1993

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA