J4_4ZER_008
3D structure
- PDB id
- 4ZER (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUG*CG*CCUAAGGUAG*CGAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4ZER|1|1A|A|1993
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4ZER_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0627
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
4ZER|1|1A|U|1864
4ZER|1|1A|U|1865
4ZER|1|1A|G|1866
*
4ZER|1|1A|C|1927
4ZER|1|1A|G|1928
*
4ZER|1|1A|C|1946
4ZER|1|1A|C|1947
4ZER|1|1A|U|1948
4ZER|1|1A|A|1949
4ZER|1|1A|A|1950
4ZER|1|1A|G|1951
4ZER|1|1A|G|1952
4ZER|1|1A|U|1953
4ZER|1|1A|A|1954
4ZER|1|1A|G|1955
*
4ZER|1|1A|C|1989
4ZER|1|1A|G|1990
4ZER|1|1A|A|1991
4ZER|1|1A|A|1992
4ZER|1|1A|A|1993
4ZER|1|1A|A|1994
Current chains
- Chain 1A
- 23s ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1x
- Transfer RNA; tRNA
Coloring options: