J4_4ZER_016

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4ZER_016 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0701

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

4ZER|1|2A|C|297
4ZER|1|2A|G|298
4ZER|1|2A|A|299
4ZER|1|2A|A|300
4ZER|1|2A|G|301
*
4ZER|1|2A|C|316
4ZER|1|2A|G|317
4ZER|1|2A|C|318
4ZER|1|2A|C|319
*
4ZER|1|2A|G|323
4ZER|1|2A|A|324
4ZER|1|2A|G|325
*
4ZER|1|2A|C|337
4ZER|1|2A|G|338
4ZER|1|2A|U|339
4ZER|1|2A|A|340
4ZER|1|2A|G|341

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24