J4_4ZER_022

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4ZER|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4ZER_022 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0599

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

4ZER|1|2A|U|1833
4ZER|1|2A|U|1834
4ZER|1|2A|G|1835
*
4ZER|1|2A|C|1905
4ZER|1|2A|G|1906
*
4ZER|1|2A|C|1924
4ZER|1|2A|C|1925
4ZER|1|2A|U|1926
4ZER|1|2A|A|1927
4ZER|1|2A|A|1928
4ZER|1|2A|G|1929
4ZER|1|2A|G|1930
4ZER|1|2A|U|1931
4ZER|1|2A|A|1932
4ZER|1|2A|G|1933
*
4ZER|1|2A|C|1967
4ZER|1|2A|G|1968
4ZER|1|2A|A|1969
4ZER|1|2A|A|1970
4ZER|1|2A|A|1971
4ZER|1|2A|A|1972

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA