J4_4ZER_028
3D structure
- PDB id
- 4ZER (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4ZER|1|2x|4SU|8, 4ZER|1|2x|U|47, 4ZER|1|2x|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4ZER_028 not in the Motif Atlas
- Homologous match to J4_6CFJ_015
- Geometric discrepancy: 0.1435
- The information below is about J4_6CFJ_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
4ZER|1|2x|G|7
4ZER|1|2x|4SU|8
4ZER|1|2x|G|9
4ZER|1|2x|G|10
*
4ZER|1|2x|C|25
4ZER|1|2x|G|26
4ZER|1|2x|U|27
*
4ZER|1|2x|A|43
4ZER|1|2x|A|44
4ZER|1|2x|G|45
4ZER|1|2x|G|46
4ZER|1|2x|U|47
4ZER|1|2x|C|48
4ZER|1|2x|G|49
*
4ZER|1|2x|C|65
4ZER|1|2x|C|66
Current chains
- Chain 2x
- tRNA met
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2Q
- 50S ribosomal protein L16
- Chain 2Z
- 50S ribosomal protein L25
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2m
- 30S ribosomal protein S13
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