J4_4ZSN_011

3D structure

PDB id

4ZSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4ZSN_011 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0566

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4ZSN|1|RA|G|1772
4ZSN|1|RA|A|1773
4ZSN|1|RA|C|1774
4ZSN|1|RA|U|1775
4ZSN|1|RA|G|1776
*
4ZSN|1|RA|C|1788
4ZSN|1|RA|A|1789
4ZSN|1|RA|C|1790
4ZSN|1|RA|A|1791
4ZSN|1|RA|G|1792
*
4ZSN|1|RA|C|1827
4ZSN|1|RA|G|1828
4ZSN|1|RA|A|1829
4ZSN|1|RA|C|1830
*
4ZSN|1|RA|G|1975
4ZSN|1|RA|U|1976
4ZSN|1|RA|A|1977
4ZSN|1|RA|A|1978
4ZSN|1|RA|C|1979

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2