J4_5AA0_003
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 5AA0|1|AA|G|1271||||P_1, 5AA0|1|AA|A|1272||||P_1, 5AA0|1|AA|U|1273||||P_1, 5AA0|1|AA|A|1274||||P_1, 5AA0|1|AA|A|1275||||P_1, 5AA0|1|AA|C|1646||||P_1, 5AA0|1|AA|G|1647||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AA0_003 not in the Motif Atlas
- Homologous match to J4_9DFE_003
- Geometric discrepancy: 0.3036
- The information below is about J4_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5AA0|1|AA|C|1270||||P_1
5AA0|1|AA|G|1271||||P_1
5AA0|1|AA|A|1272||||P_1
5AA0|1|AA|U|1273||||P_1
5AA0|1|AA|A|1274||||P_1
5AA0|1|AA|A|1275||||P_1
5AA0|1|AA|A|1276||||P_1
*
5AA0|1|AA|U|1294||||P_1
5AA0|1|AA|C|1295||||P_1
*
5AA0|1|AA|G|1645||||P_1
5AA0|1|AA|C|1646||||P_1
5AA0|1|AA|G|1647||||P_1
5AA0|1|AA|C|1648||||P_1
*
5AA0|1|AA|G|2009||||P_1
5AA0|1|AA|G|2010||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AO
- 50S ribosomal protein L17
- Chain AT
- 50S ribosomal protein L22
- Chain Ab
- 50S ribosomal protein L32
Coloring options: