J4_5AA0_012
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CGUAAAGGG*CGAAAGC*GCCCUAAACGAUG*CCG
- Length
- 32 nucleotides
- Bulged bases
- 5AA0|1|BA|G|570||||P_1, 5AA0|1|BA|U|571||||P_1, 5AA0|1|BA|A|572||||P_1, 5AA0|1|BA|G|576||||P_1, 5AA0|1|BA|G|818||||P_1, 5AA0|1|BA|A|819||||P_1, 5AA0|1|BA|U|820||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AA0|1|BA|C|569||||P_1
5AA0|1|BA|G|570||||P_1
5AA0|1|BA|U|571||||P_1
5AA0|1|BA|A|572||||P_1
5AA0|1|BA|A|573||||P_1
5AA0|1|BA|A|574||||P_1
5AA0|1|BA|G|575||||P_1
5AA0|1|BA|G|576||||P_1
5AA0|1|BA|G|577||||P_1
*
5AA0|1|BA|C|764||||P_1
5AA0|1|BA|G|765||||P_1
5AA0|1|BA|A|766||||P_1
5AA0|1|BA|A|767||||P_1
5AA0|1|BA|A|768||||P_1
5AA0|1|BA|G|769||||P_1
5AA0|1|BA|C|770||||P_1
*
5AA0|1|BA|G|809||||P_1
5AA0|1|BA|C|810||||P_1
5AA0|1|BA|C|811||||P_1
5AA0|1|BA|C|812||||P_1
5AA0|1|BA|U|813||||P_1
5AA0|1|BA|A|814||||P_1
5AA0|1|BA|A|815||||P_1
5AA0|1|BA|A|816||||P_1
5AA0|1|BA|C|817||||P_1
5AA0|1|BA|G|818||||P_1
5AA0|1|BA|A|819||||P_1
5AA0|1|BA|U|820||||P_1
5AA0|1|BA|G|821||||P_1
*
5AA0|1|BA|C|879||||P_1
5AA0|1|BA|C|880||||P_1
5AA0|1|BA|G|881||||P_1
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BL
- 30S ribosomal protein S8
- Chain BO
- 30S ribosomal protein S11
- Chain BP
- 30S ribosomal protein S12
- Chain BS
- 30S ribosomal protein S15
- Chain BU
- 30S ribosomal protein S17
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