Loop J4_5AA0

3D structure

PDB id: 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å

Loop

Sequence: CCGGAUAGCUC*GAGCAGG*CCGUGUCCUUG*CGAGUCCGG
Length: 38 nucleotides
Bulged bases: 5AA0|1|BD|U|47||||P_1, 5AA0|1|BD|C|48||||P_1
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5AA0|1|BD|C|3||||P_1
5AA0|1|BD|C|4||||P_1
5AA0|1|BD|G|5||||P_1
5AA0|1|BD|G|6||||P_1
5AA0|1|BD|A|7||||P_1
5AA0|1|BD|U|8||||P_1
5AA0|1|BD|A|9||||P_1
5AA0|1|BD|G|10||||P_1
5AA0|1|BD|C|11||||P_1
5AA0|1|BD|U|12||||P_1
5AA0|1|BD|C|13||||P_1
*
5AA0|1|BD|G|22||||P_1
5AA0|1|BD|A|23||||P_1
5AA0|1|BD|G|24||||P_1
5AA0|1|BD|C|25||||P_1
5AA0|1|BD|A|26||||P_1
5AA0|1|BD|G|27||||P_1
5AA0|1|BD|G|28||||P_1
*
5AA0|1|BD|C|42||||P_1
5AA0|1|BD|C|43||||P_1
5AA0|1|BD|G|44||||P_1
5AA0|1|BD|U|45||||P_1
5AA0|1|BD|G|46||||P_1
5AA0|1|BD|U|47||||P_1
5AA0|1|BD|C|48||||P_1
5AA0|1|BD|C|49||||P_1
5AA0|1|BD|U|50||||P_1
5AA0|1|BD|U|51||||P_1
5AA0|1|BD|G|52||||P_1
*
5AA0|1|BD|C|62||||P_1
5AA0|1|BD|G|63||||P_1
5AA0|1|BD|A|64||||P_1
5AA0|1|BD|G|65||||P_1
5AA0|1|BD|U|66||||P_1
5AA0|1|BD|C|67||||P_1
5AA0|1|BD|C|68||||P_1
5AA0|1|BD|G|69||||P_1
5AA0|1|BD|G|70||||P_1

Current chains

Chain BD: tRNA chain 2

Nearby chains

Chain AA: Large subunit ribosomal RNA; LSU rRNA
Chain AN: 50S ribosomal protein L16
Chain BZ: GTP-binding protein

J4_5AA0_016