J4_5ADY_003
3D structure
- PDB id
- 5ADY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of the 50S ribosome subunit bound with HflX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5ADY_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.4235
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5ADY|1|B|C|601
5ADY|1|B|A|602
5ADY|1|B|A|603
5ADY|1|B|G|604
*
5ADY|1|B|C|624
5ADY|1|B|G|625
5ADY|1|B|A|626
5ADY|1|B|A|627
5ADY|1|B|G|628
*
5ADY|1|B|C|635
5ADY|1|B|G|636
5ADY|1|B|A|637
5ADY|1|B|G|638
*
5ADY|1|B|C|650
5ADY|1|B|G|651
5ADY|1|B|U|652
5ADY|1|B|U|653
5ADY|1|B|A|654
5ADY|1|B|A|655
5ADY|1|B|G|656
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain 3
- 50S RIBOSOMAL PROTEIN L35
- Chain E
- 50S RIBOSOMAL PROTEIN L4
- Chain L
- 50S RIBOSOMAL PROTEIN L15
Coloring options: