J4_5ADY_004

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAUAAAG*CUC*GCUUG*CAG

Length

19 nucleotides

Bulged bases

5ADY|1|B|G|1271, 5ADY|1|B|A|1272, 5ADY|1|B|U|1273, 5ADY|1|B|A|1274, 5ADY|1|B|C|1646, 5ADY|1|B|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ADY|1|B|C|1270
5ADY|1|B|G|1271
5ADY|1|B|A|1272
5ADY|1|B|U|1273
5ADY|1|B|A|1274
5ADY|1|B|A|1275
5ADY|1|B|A|1276
5ADY|1|B|G|1277
*
5ADY|1|B|C|1293
5ADY|1|B|U|1294
5ADY|1|B|C|1295
*
5ADY|1|B|G|1645
5ADY|1|B|C|1646
5ADY|1|B|U|1647
5ADY|1|B|U|1648
5ADY|1|B|G|1649
*
5ADY|1|B|C|2008
5ADY|1|B|A|2009
5ADY|1|B|G|2010

Current chains

Chain B

23S RRNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L32

Chain N

50S RIBOSOMAL PROTEIN L17

Chain S

50S RIBOSOMAL PROTEIN L22