J4_5ADY_010

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ADY_010 not in the Motif Atlas

Homologous match to J4_4WF9_009

Geometric discrepancy: 0.2811

The information below is about J4_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5ADY|1|B|G|2643
5ADY|1|B|G|2644
5ADY|1|B|G|2645
5ADY|1|B|C|2646
*
5ADY|1|B|G|2674
5ADY|1|B|A|2675
5ADY|1|B|C|2676
*
5ADY|1|B|G|2731
5ADY|1|B|G|2732
5ADY|1|B|A|2733
5ADY|1|B|A|2734
5ADY|1|B|G|2735
*
5ADY|1|B|U|2769
5ADY|1|B|G|2770
5ADY|1|B|C|2771

Current chains

Chain B

23S RRNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L3

Chain J

50S RIBOSOMAL PROTEIN L13

Chain K

50S RIBOSOMAL PROTEIN L14