J4_5ADY_013

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5ADY|1|B|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ADY_013 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.2543

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5ADY|1|B|G|1310
5ADY|1|B|G|1311
5ADY|1|B|U|1312
5ADY|1|B|U|1313
5ADY|1|B|C|1314
*
5ADY|1|B|G|1338
5ADY|1|B|G|1339
5ADY|1|B|U|1340
5ADY|1|B|G|1341
5ADY|1|B|A|1342
5ADY|1|B|G|1343
*
5ADY|1|B|C|1404
5ADY|1|B|U|1405
*
5ADY|1|B|A|1597
5ADY|1|B|A|1598
5ADY|1|B|U|1599
5ADY|1|B|C|1600
5ADY|1|B|G|1601
5ADY|1|B|U|1602
5ADY|1|B|A|1603
5ADY|1|B|C|1604

Current chains

Chain B

23S RRNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain T

50S RIBOSOMAL PROTEIN L23