J4_5ADY_014

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ADY_014 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.1567

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5ADY|1|B|A|1772
5ADY|1|B|A|1773
5ADY|1|B|C|1774
5ADY|1|B|U|1775
5ADY|1|B|G|1776
*
5ADY|1|B|C|1788
5ADY|1|B|A|1789
5ADY|1|B|C|1790
5ADY|1|B|A|1791
5ADY|1|B|G|1792
*
5ADY|1|B|U|1827
5ADY|1|B|G|1828
5ADY|1|B|A|1829
5ADY|1|B|C|1830
*
5ADY|1|B|G|1975
5ADY|1|B|U|1976
5ADY|1|B|A|1977
5ADY|1|B|A|1978
5ADY|1|B|U|1979

Current chains

Chain B

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2