J4_5AFI_002
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 5AFI|1|A|A|654||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AFI_002 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.169
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5AFI|1|A|C|601||||P_1
5AFI|1|A|A|602||||P_1
5AFI|1|A|A|603||||P_1
5AFI|1|A|G|604||||P_1
*
5AFI|1|A|C|624||||P_1
5AFI|1|A|G|625||||P_1
5AFI|1|A|A|626||||P_1
5AFI|1|A|A|627||||P_1
5AFI|1|A|G|628||||P_1
*
5AFI|1|A|C|635||||P_1
5AFI|1|A|G|636||||P_1
5AFI|1|A|A|637||||P_1
5AFI|1|A|G|638||||P_1
*
5AFI|1|A|C|650||||P_1
5AFI|1|A|G|651||||P_1
5AFI|1|A|U|652||||P_1
5AFI|1|A|U|653||||P_1
5AFI|1|A|A|654||||P_1
5AFI|1|A|A|655||||P_1
5AFI|1|A|G|656||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
Coloring options: