J4_5AFI_015
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(4SU)GG*CGUC*GAAGAUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 5AFI|1|w|4SU|8||||P_1, 5AFI|1|w|U|47||||P_1, 5AFI|1|w|C|48||||P_1
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AFI_015 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.5463
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5AFI|1|w|G|7||||P_1
5AFI|1|w|4SU|8||||P_1
5AFI|1|w|G|9||||P_1
5AFI|1|w|G|10||||P_1
*
5AFI|1|w|C|25||||P_1
5AFI|1|w|G|26||||P_1
5AFI|1|w|U|27||||P_1
5AFI|1|w|C|28||||P_1
*
5AFI|1|w|G|42||||P_1
5AFI|1|w|A|43||||P_1
5AFI|1|w|A|44||||P_1
5AFI|1|w|G|45||||P_1
5AFI|1|w|A|46||||P_1
5AFI|1|w|U|47||||P_1
5AFI|1|w|C|48||||P_1
5AFI|1|w|G|49||||P_1
*
5AFI|1|w|C|65||||P_1
5AFI|1|w|C|66||||P_1
Current chains
- Chain w
- P-site fMet-tRNAfMet
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain g
- 30S ribosomal protein S7
Coloring options: